GgaALTA0000354-3/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000864 | FBXW2
Description
F-box/WD repeat-containing protein 2 [Source:RefSeq peptide;Acc:NP_001007843]
Coordinates
chr17:10380193-10381244:-
Coord C1 exon
chr17:10381050-10381244
Coord A exon
chr17:10380240-10380287
Coord C2 exon
chr17:10380193-10380239
Length
48 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGATGAACTTGATGTTCTAGTCA
3' ss Score
4.98
Exon sequences
Seq C1 exon
GATCAGATGACTTGTCTGCAAAACTGTGGGATGTAAGCACAGGTCAGTGCATCTATGGTATCCAGACACACACTTGTGCTACAGTGAAGTTTGATGAACAAAAACTTGTAACGGGCTCTTTTGATAACACAGTAGCCTGTTGGGAATGGAGCTCTGGGGCAAAGACACAGCATTTCAGAGGACACACTGGTGCAG
Seq A exon
TCAGTGGCTCTGCAGACTTCACTGTGAAAGTGTGGGCCTTATCAACAG
Seq C2 exon
GAACGTGCCTGAATACCCTTACTGGACACACAGAATGGGTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864-7-13,7-12,7-11,7-10,7-9-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
NA
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTAACGGGCTCTTTTGA
R:
GTGACCCATTCTGTGTGTCCA
Band lengths:
135-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]