GgaALTA0000372-3/3 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chrUn_random:44417751-44418074:+
Coord C1 exon
chrUn_random:44417751-44417861
Coord A exon
chrUn_random:44417968-44417973
Coord C2 exon
chrUn_random:44417974-44418074
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCATTTCCTCTATCATCCAGCAG
3' ss Score
5.23
Exon sequences
Seq C1 exon
CTGAACTTCCAGTCCCCAAACCCATGGTGATCTCCCTGCTGGAAGGAGGGGAAGAGCCCTGGATCCCAGATGTGCACAGCCATGAGGACGTAGCGGAAGACTTTTGCCCAG
Seq A exon
CAGCAG
Seq C2 exon
ATGAGACCTCAGGTATAAAGGAGGATCTGCAGAGAAGCGGTGTGGCCAAAAGGCTTTGGGGTAGTGCCTCCATGGTAGAAATCAGAGATGCCCAAGGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000915-2-5,2-4,2-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.254
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACGTAGCGGAAGACTT
R:
GGCACTACCCCAAAGCCTTTT
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]