GgaALTA0000431-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1429272-1429801:+
Coord C1 exon
chr13:1429272-1429359
Coord A exon
chr13:1429647-1429698
Coord C2 exon
chr13:1429699-1429801
Length
52 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTGGCTAATCTCACCACAGCTC
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTTTCTTTTCATTCTACTGGGCCCCCAAGCCAAAGCGAAAGCCTACCATGAGATTGGAAGGGCTATGGCCACGTTGCTGACAGATGAG
Seq A exon
CTCTTCCAAGGGATTGCCCGTCAGGCTAAGCACCAAGAAGACCTCATTGCAG
Seq C2 exon
GGATTGATGAGTTTCTGGATGAACTGACTGTGCTTCCTCCTGGAAAATGGGACCCCAGTGACCGAATTCCTCCACCACGCTGCCTGTCGTCCCCAAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.6=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(14.4=69.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTCTACTGGGCCCCCAA
R:
CACTGGGGTCCCATTTTCCAG
Band lengths:
141-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]