GgaALTA0000440-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001073 | F1NVM8_CHICK
Description
NA
Coordinates
chr17:10183740-10184978:-
Coord C1 exon
chr17:10184821-10184978
Coord A exon
chr17:10183965-10183967
Coord C2 exon
chr17:10183740-10183964
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AAAAGCTTTTCCTTTTCCAGTAG
3' ss Score
6.53
Exon sequences
Seq C1 exon
ATATCGGAGGAGGAGATTGAAAGAATTATGTCCGGACAAGAATTTGAGGGAGAGGCAAACATGTCATGGAGCAACAATGGAGACAGCGACCACAGTTCCCCTGGAAATGGAGTTTCTGAGAGCAACCAGCCATCACCTGTGTCTACTCCATCTTCAAG
Seq A exon
TAG
Seq C2 exon
GTCCGTGGAGCTGAACGGATTCGCTGCACTCAGGGATCAATACATTGGGACACCAGTGTCCACGCACTATCAGTACCTCCCGCACCTTTTTAGCTATTCTGCTCACTCGGCACTGGTGCCCCCCCAGGCGCGCAGCCTGGACCCCCAGTCTCACAGCCTGATCAACCAGCTGGTGTCAGCGGAGGACCTGGAGCCGCTCGGCACGCCGATGCTCATCGAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001073-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010425=Hormone_recep=PU(2.5=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCCATCACCTGTGTCTA
R:
GATAGTGCGTGGACACTGGTG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]