GgaALTA0000465-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001109 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr27:1065291-1066433:+
Coord C1 exon
chr27:1065291-1065351
Coord A exon
chr27:1066345-1066350
Coord C2 exon
chr27:1066351-1066433
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAGTAACTAAATTCTTTCAGTTG
3' ss Score
3.58
Exon sequences
Seq C1 exon
AGTTGCTAGAGCAGCCAAATTCCCCTTTTGTTTGGGGTATGACCAACTCTGGTATAAACAG
Seq A exon
TTGCAG
Seq C2 exon
TGTCACCTCTGGACAAAAGAATTACCTTCCTTCAAGTGTACGTGCACCTGAGTCCTCCCCATATACTGCATCGTGGAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001109-9-12,9-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGCAGCCAAATTCCCC
R:
AGGTGCACGTACACTTGAAGG
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]