GgaALTA0000478-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9038621-9052792:-
Coord C1 exon
chr17:9052661-9052792
Coord A exon
chr17:9038678-9038680
Coord C2 exon
chr17:9038621-9038677
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
AAGTTTCCACTTTGATACAGCAG
3' ss Score
3.16
Exon sequences
Seq C1 exon
GACATAGCTGAGAATGGGTGTTCTGCAGCACCAGAGCAGTCTCTACCAAGACCAGCACCTTCTCCATTGGTTGAAAAGAAGGACACTAAATTAAGAGAGGACAGAAGACCAATCACAGTACATTTTGGTCAG
Seq A exon
CAG
Seq C2 exon
CAAAGACTCCGTCCGCCTCGGCCACCGCCTCCAAAGATACAGCGTTCAACTAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-41-61,41-60-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGAAGACCAATCACAGT
R:
GGGCCTAGTTGAACGCTGTAT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]