GgaALTA0000502-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8906075-8908018:-
Coord C1 exon
chr17:8907878-8908018
Coord A exon
chr17:8906177-8906201
Coord C2 exon
chr17:8906075-8906176
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCTATTATTATTACTCCAAGCAG
3' ss Score
-1.76
Exon sequences
Seq C1 exon
GTAGAAGTAGATGGCCAGAAATTCAGAGGTGCAGGCCCAAATAAGAAAGTAGCAAAAGCAAGTGCTGCATTAGCAGCACTTGAGAAACTGTTTTCTGGACCTAATGCAGCAAACAACAAGAAAAAGAAAATTCTTCCTCAG
Seq A exon
CAGACTAAAGGAGTTGTCAATACAG
Seq C2 exon
CTGTTTCTGCAGCAGTCCAGGCTGTGCGAGGTAGAGGACGAGGTGCTTTAACAAGAGGTGCATTTGTTGGGGCAGCTGCTGCTACTGGATACATAACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-41-39,41-38,41-37-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(46.0=61.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGACCTAATGCAGCAAACA
R:
GCCCCAACAAATGCACCTCTT
Band lengths:
121-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]