GgaALTA0000503-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9627815-9633306:-
Coord C1 exon
chr17:9633162-9633306
Coord A exon
chr17:9627907-9627909
Coord C2 exon
chr17:9627815-9627906
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
TTTTATCCCATTTTTACCAGTAG
3' ss Score
5.5
Exon sequences
Seq C1 exon
AAACTTACAGAAGAGAAGTATCTCGTGGAGGAGCATGTAAATGAGGCAGCTATTATTATTCGTAACACAAAGGAGCCCAAGCTAACCTTGAAGGTGATACTTACGTCCCCTCTCATTCGAGATGAAGCAGAGAAGAAGGAAGGAG
Seq A exon
TAG
Seq C2 exon
ACAGTGTTGCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGGAGGCCTTGGCGTCTCTGCGGCACGCCAAATGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-8-11,8-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.4=100)
A:
NA
C2:
PF075289=DZF=FE(12.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATACTTACGTCCCCTCTCA
R:
TGCCTGTCCAATAAGTCCGGA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]