GgaALTA0000574-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001331 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr24:1571365-1572076:+
Coord C1 exon
chr24:1571365-1571492
Coord A exon
NA
Coord C2 exon
chr24:1572006-1572076
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CTTCTTGAAACTCCTTTTAGATC
3' ss Score
7.72
Exon sequences
Seq C1 exon
ACCGGAACGCGCCCGTGCAGAAAGTCTTCACTGGCCACCTGCGAGTTCTGAACAGGGAATTCATTGATGCCTATGAGAACTCCAGTTCTCCAGAGTTCATCATGCTGGCTAAGAAGGTGAAGAGCACG
Seq A exon
NA
Seq C2 exon
ATCGAGGATATCTACAGAAGTCAGCCAGATATTGGCCCTTACCATAAGGAGACAGTAATAACTGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001331-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(36.2=88.4)
A:
NA
C2:
PF0139015=SEA=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGCAGAAAGTCTTCACT
R:
CTTATGGTAAGGGCCAATATCTGG
Band lengths:
165-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]