GgaALTA0000610-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001389 | TTLL11
Description
NA
Coordinates
chr17:9332516-9336687:-
Coord C1 exon
chr17:9336581-9336687
Coord A exon
NA
Coord C2 exon
chr17:9332516-9332616
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CACTTCCTCTTCATGAGCAGGTG
3' ss Score
6.46
Exon sequences
Seq C1 exon
AAACTGCAAGCTCAGTAACAGCAATTTTTCAATGGCTGCTGTAGATATCTTATACATTGATATCACAAGAAGGTGGAACAGTATGGGAATTGATCACAAAGAATCAG
Seq A exon
NA
Seq C2 exon
GTGGCATCACTGATTGACTTCTGTGAGTATCACCTGGCTGCCCTGGATGAGAAGCGCCTGCTTTGTGGCCGAGGCGTTGTGGAGCGCCGAAGTGCAGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389-10-17,10-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAAGCTCAGTAACAGCA
R:
GCAGGCGCTTCTCATCCAG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]