GgaALTA0000732-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8911271-8912173:-
Coord C1 exon
chr17:8912153-8912173
Coord A exon
chr17:8911551-8911568
Coord C2 exon
chr17:8911271-8911550
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCCGGGCTTCCAGTCACAGATC
3' ss Score
0.58
Exon sequences
Seq C1 exon
CCCCATGACATCAGAGCACAG
Seq A exon
ATCTCCATCAACGTGGAG
Seq C2 exon
GACTGCGAGGACACGAAGGACGTGAAGGAGCACTGGGGCATCAAGACGGGCCACCACAGGAACTCGTGCTCCAGTGACCAATCCGAGCACCCGCTGCTGCGGCGCAAGAGCATGCAGTGGGCACGGCGGCTGAGCAGGAAGGGCAACAAGCACTCTGGCAAGACAGCCGAGTGGATCAGCCAGCAGCGGCTCAGCCTGTACCGCCGCTCCGAGCGGCAGGAGCTGTCCGAGCTCGTCAAGAACCGCATGAAGCACCTGGGTTTGCCCACCACCGGGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-35-38,35-37,35-36-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.418
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATGACATCAGAGCACAG
R:
GTGCTCGGATTGGTCACTGG
Band lengths:
111-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]