GgaALTA0000779-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8715088-8716135:+
Coord C1 exon
chr17:8715088-8715136
Coord A exon
chr17:8716027-8716029
Coord C2 exon
chr17:8716030-8716135
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTTTTGTACCTTGGACTCAGCAG
3' ss Score
3.17
Exon sequences
Seq C1 exon
TTCTTCAAAGCGTTTACAAAGCAGTTTACAACTGGAGAAAATTACAAAG
Seq A exon
CAG
Seq C2 exon
GAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-4-3,4-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.3=100)
A:
NA
C2:
PF0008515=Thioredoxin=PD(12.5=38.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGCGTTTACAAAGCAGTT
R:
GGGAATGGTTCTGCAAGAAGTCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]