GgaALTA0000850-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001889 | CARD9
Description
NA
Coordinates
chr17:8600482-8600995:+
Coord C1 exon
chr17:8600482-8600661
Coord A exon
NA
Coord C2 exon
chr17:8600849-8600995
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CATTCTTCTTTGTCCAGCAGGTT
3' ss Score
7.83
Exon sequences
Seq C1 exon
ATTGATAGCTTGAAGCATAGCCTCATGAAGGCTGAGGACGACTGCAAACTAGAGCGTAAGCACTCGATGAAACTGAAGCATGCCATAGAACAACGTCCGAGCCATGAAGTGATGTGGGAGATCCAGCAGGAGAAGGAGCTGCTTTTGGCCAAGAATCAGGAGCTGGAGAACACTCTTCAG
Seq A exon
NA
Seq C2 exon
GTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAATCAGGAGCTGGAG
R:
CACCTGGCTGCAGTCATTCTG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]