GgaALTA0000854-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8591601-8592131:+
Coord C1 exon
chr17:8591601-8591682
Coord A exon
chr17:8591891-8591929
Coord C2 exon
chr17:8591930-8592131
Length
39 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
3' ss Seq
TGTTTGTTCATGCGCAGCAGTCA
3' ss Score
0.73
Exon sequences
Seq C1 exon
GTGTGGGAAGCAAGTGCTGCGGGTTACCCTGGAGGATGTGAGAAGAGTGTTGAGAGAAAACACGTGCTTTCAGAGGAAACGT
Seq A exon
TCAAAGCTAATAATGTCTTCTGCTGCCACTTTAACAAAG
Seq C2 exon
ACGTCTGGAGTTGGTGCATCTGCTGCTGAGAAGCACAGGGGGCTGTGGAGCACCATGGGGAAAAGTCGTCGTCAAGAGAGAGCACGTTGGAGAAAAATGAACCTTGACAGAAAACTCCTCATGGCAGTGACACCTTGGGTGGGCGACGTGCTATTGCCTTGCACTTTGCGAGCTGGGAAGATGGCTTTTGATCAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910-25-26,25-25,25-24-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGCTTTCAGAGGAAACG
R:
CCAACGTGCTCTCTCTTGACG
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]