GgaALTA0000993-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1380486-1381830:-
Coord C1 exon
chr8:1381610-1381830
Coord A exon
NA
Coord C2 exon
chr8:1380486-1380558
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GCTTTATCGTGTTTTTTCAGTAT
3' ss Score
8.04
Exon sequences
Seq C1 exon
ACGCAAAACAGAAGAAGAACGTCAGAAGAAGGAGGATGAACGAGCACGGCGAGAATTCATTAAGCAGGAATACATGAGAAGGAAACAACTAAAGCTTATGGAAGAAATGGATACTGTTATAAAACCACGTTCCCTGTCAATCAAACAAAAAAAGCCACGTCCAAAATCTATTCATAGGGATCACATTGAGTCACCTAAGACACCGGTCAAAGGTCCACCAG
Seq A exon
NA
Seq C2 exon
TATCTAGTCTTTCACTGGCATCGCTGAATACAGGGGACAATGAGAGTGTGCAGTCAGGCAAGAGAACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-21-24,21-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGTTCCCTGTCAATCAA
R:
CAGCGATGCCAGTGAAAGACT
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]