GgaALTA0001085-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15038981-15040689:-
Coord C1 exon
chr14:15040620-15040689
Coord A exon
chr14:15039159-15039161
Coord C2 exon
chr14:15038981-15039158
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
AAACCTGTGTTTTGTTTCAGAAG
3' ss Score
8.74
Exon sequences
Seq C1 exon
CTCTAAAAGAATTGGAACCTTCCAGGAAGAGGCTCAAAACTGCTCCAAGAAGTCCACGTGGTTCTGATAG
Seq A exon
AAG
Seq C2 exon
TACCCCGGTGTTACGCGGTCTCCTTTCTCTGCATGCGGCTGCTGGTAGGCCAGAATTAGATGCTATGCATTACACAGAAGACCAACCACTGACTCCAGAAGAGCAGTTTGTTGTCATGCACTCACACCAGGAGGAGATGAATAAGCGAGAAAAGTCACCTTCAGGAAATGATAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.836
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCAGGAAGAGGCTCAA
R:
CCGCATGCAGAGAAAGGAGAC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]