GgaALTA0001097-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002375 | Q9W737_CHICK
Description
NA
Coordinates
chr17:8521640-8522342:+
Coord C1 exon
chr17:8521640-8521772
Coord A exon
chr17:8522085-8522222
Coord C2 exon
chr17:8522223-8522342
Length
138 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTGTTCCCCCATTTCTCTAGGGG
3' ss Score
9.42
Exon sequences
Seq C1 exon
TGCGTGGCTGGTTATCATGGAGTTAACTGCTCAGAGGAGATCAATGAGTGCTTGTCCCACCCATGCCAGAATGGAGGAACCTGCATCGATCTCATCAATACCTACAAATGCTCCTGCCCCAGAGGAACTCAAG
Seq A exon
GGGTGCACTGTGAGATCAATGTGGATGACTGCAGCCCTTTCTTTGATCCCGTCACCCTGGGGCCCAAGTGCTTTAACAATGGCAAGTGCACGGATCGGGTAGGTGGCTACAGCTGCATCTGCCCCCCTGGCTTTGTAG
Seq C2 exon
GGGAGCGCTGCGAGGGAGACGTCAACGAGTGCCTCTCCAACCCCTGCGACGCGCGCGGCACCCAGAACTGCGTGCAGCGGGTCAATGACTACAAATGCGAGTGCCGGCCTGGCTACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-21-25,21-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(25.8=17.8),PF0000822=EGF=PU(90.3=62.2)
A:
NA
C2:
PF0000822=EGF=PD(6.5=2.3),PF0000822=EGF=WD(100=44.8),PF0000822=EGF=PU(90.9=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGCTGGTTATCATGGAG
R:
AGGCCGGCACTCGCATTT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]