GgaALTA0001136-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2790913-2792261:+
Coord C1 exon
chr8:2790913-2791062
Coord A exon
NA
Coord C2 exon
chr8:2792183-2792261
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
AAACATTTTGCTGAATCCAGGTC
3' ss Score
4.47
Exon sequences
Seq C1 exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
Seq A exon
NA
Seq C2 exon
GTCCTCGGTATATCATGAGTTCTACAGATATATGCTTTTATATAAATATCACCAAAGAAGAGAATTCTGCTTTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-19-22,19-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
NA
C2:
PF0349313=BK_channel_a=PD(8.5=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATGGCAGATGCTCTGGT
R:
AGAACTCATGATATACCGAGGAC
Band lengths:
139-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]