GgaALTA0001169-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr23:4314844-4315939:-
Coord C1 exon
chr23:4315727-4315939
Coord A exon
chr23:4314992-4314994
Coord C2 exon
chr23:4314844-4314991
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
CAATTTTACTGTTTCCACAGAAG
3' ss Score
6.81
Exon sequences
Seq C1 exon
ATCAGACATGAAGTGAATTACCAGAACGTCGTACACAAGCTCTGCAGTGATGCCTGCTTCTCCAAGTTCCGCTCTGCTAATAACTTAACCATGAACTGCTGTGAGAATTGTGGAGGTTACTGCTACAGTGGGTCTGGGCAGTGTCGCATGCTGCAGATAGAGGGACAGTCAAAAAAGTTCTGCAGTTCGACATGTGTGACACTGTACAAGCAG
Seq A exon
AAG
Seq C2 exon
TCAGCTAAAATTACACCTTGTGCACTGTGTAAATCCTTGAGATCTTCAGCTGAGATGATAGAGAGCACAAATAACTCGGGAAAAACTGAACTGTTTTGCTCTGTTAACTGCTTGTCAGCATATAGAGTAAAAATGGTTACTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-21-22,21-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTGCAGATAGAGGGAC
R:
AGGATTTACACAGTGCACAAGGT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]