GgaALTA0001263-1/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3972737-3973563:-
Coord C1 exon
chr26:3973441-3973563
Coord A exon
NA
Coord C2 exon
chr26:3972737-3972832
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
GCTGGTGAAATGCCTGTCAGGTT
3' ss Score
3.9
Exon sequences
Seq C1 exon
ATGTTGATGAATGCAGCATTAACCGCGGAGGCTGCAAATTTGGCTGCATCAACACACCTGGCAGCTACCAGTGTACCTGTCCTGCCGGCTGCAAGCTGCACTGGAACAAAAAGGACTGCATAG
Seq A exon
NA
Seq C2 exon
GTTCGGTGCCACCACGGGCCACTCTCACCTGCAACAAGACGGGCAAGAAGGACAGCTGCGCCCTCACCTGCGCCTCCAAGGCTCGTTTCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-10-12,10-11,10-10-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGTGTACCTGTCCTGCC
R:
GTCCTTCTTGCCCGTCTTGTT
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]