GgaALTA0001280-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7732565-7733490:-
Coord C1 exon
chr17:7733367-7733490
Coord A exon
NA
Coord C2 exon
chr17:7732565-7732617
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TACAACTTTTCTTTTCTCAGTCC
3' ss Score
8.07
Exon sequences
Seq C1 exon
GAGTTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
Seq A exon
NA
Seq C2 exon
TCCTCAGGGCCTCAACTTTTCTTCTCAGAGCTCCTCCAGTCCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-33-33,33-32-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACACGACGCTCAAGTAC
R:
GGACTGGAGGAGCTCTGAGAA
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]