GgaALTA0001280-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7053040-7053960:-
Coord C1 exon
chr17:7053837-7053960
Coord A exon
chr17:7053060-7053087
Coord C2 exon
chr17:7053040-7053059
Length
28 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TACAACTTTTCTTTTCTCAGTCC
3' ss Score
8.07
Exon sequences
Seq C1 exon
GAGTTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
Seq A exon
TCCTCAGGGCCTCAACTTTTCTTCTCAG
Seq C2 exon
AGCTCCTCCAGTCCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-49-50,49-49,49-48,49-47-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATTCGCTGAAGGAGAGC
R:
CAGAAGGGACTGGAGGAGCT
Band lengths:
123-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]