GgaALTA0001540-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4948029-4948882:-
Coord C1 exon
chr15:4948692-4948882
Coord A exon
chr15:4948137-4948227
Coord C2 exon
chr15:4948029-4948136
Length
91 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TCTTTTGATTTGATTAATAGAGA
3' ss Score
4.35
Exon sequences
Seq C1 exon
AATTTAACACATGGCACGGGGTTTCATGTTGTCTTGGATACAATTCCTTCACTGATGAATGCCTTAAGAATGGTATGGATTATCTCACGGCATTACAACACAGACGAAAGGATGGCACCCCTCATGGAAAGAATTGCTTGGGAAATTTCAAATCGAGTGTGCAAAGTTGTGGATTTGCATACACTATTTAA
Seq A exon
AGAAGATAGAGCTGCTGCAAAAAAGAAAATAGCAGAGGCCAAAAGTACTCTTGAACAGTGGAAGAAATCTTATTTTGCTGTTCGTGCCCAG
Seq C2 exon
ATTGAAGCATCAGGAAGAGAGCAACACTGGGAATTTGACCGAAAACTTTTATTTGGGAAAACAGATAATATGACTTCAGTCTGTCAAGATCTGTATGACATTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.0=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCACTGATGAATGCCTT
R:
TCCCAGTGTTGCTCTCTTCCT
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]