GgaALTA0001543-3/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4910306-4911056:-
Coord C1 exon
chr15:4910952-4911056
Coord A exon
chr15:4910360-4910460
Coord C2 exon
chr15:4910306-4910359
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGGTTTCTGAATGTGACTAGGCA
3' ss Score
4.36
Exon sequences
Seq C1 exon
GCTTGTTTGAGAAGCACAAGTTATTGTTCTCCTTTAATATGACTGTGAAGATAGAACAAGCTGATGATAGAGTTCCCCATGAAGAACTTGACTTCTTTTTAAAAG
Seq A exon
GCAATATTTCCCTGGAGAAGAGTGCACGAAAGAAACCATATGCTTGGCTTCCAGATCAAGGCTGGGAAGACCTAATTCGCTTGTCTGAACTGTTTCCTCAG
Seq C2 exon
CAATTTGAATCTCTTCCAGATGATGTGGAAAAAAATCCAGATGTATGGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-69-69,69-68,69-67,69-66-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(10.9=90.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTTGAGAAGCACAAGT
R:
TTTTTCCACATCATCTGGAAGAGA
Band lengths:
138-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]