GgaALTA0001546-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6891492-6892326:+
Coord C1 exon
chr17:6891492-6891566
Coord A exon
chr17:6892222-6892254
Coord C2 exon
chr17:6892255-6892326
Length
33 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GGTGTGATGTTTTATTACAGATA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCAATGGGTTTGCTACAACTTCATCATTCAAGCATCTGTGCTTACAAGGAAATGTTTGTGACTTGGGATAATGAG
Seq A exon
ATATCATCTCTGTACCTTTGTCTGGTAATGCAG
Seq C2 exon
CACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-6-4,6-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.8=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTACAAGGAAATGTTTGTGA
R:
CACGTCTGCTATTTTCTCTGGCT
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]