GgaALTA0001553-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003187 | SURF1_CHICK
Description
NA
Coordinates
chr17:7535787-7536361:-
Coord C1 exon
chr17:7536280-7536361
Coord A exon
chr17:7535888-7535989
Coord C2 exon
chr17:7535787-7535887
Length
102 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTTTTTACTTCTTGTCACAGGTA
3' ss Score
9.74
Exon sequences
Seq C1 exon
GAAGCACAGTCCCAGGAGGGCCCATTGGAGGCCAAACAAGAGTGAGCCTGAGAAACGAGCACATGCAGTACATCGTTACCTG
Seq A exon
GTATGGCTTGTGTGCTGCAACTTCCTTCTTGTGGTACAGAAAATTTATACAGAAAATACCTCTGTGAGGGGAAAGATTAATTTCTGCTCTCCTGTGCTACAG
Seq C2 exon
TCAAGACTGCAGCCTGATCAATCAAGAACTTAATCTCAGGGCACGGGACTTACCAGCTGATGCTGGCAGCAGTTTGGAAGCACTGAACTTCAGAATTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003187-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0210410=SURF1=FE(12.3=100)
A:
NA
C2:
PF0210410=SURF1=PD(2.7=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACAGTCCCAGGAGG
R:
ATTCTGAAGTTCAGTGCTTCCA
Band lengths:
178-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]