GgaALTA0001603-1/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr8:4847336-4848288:-
Coord C1 exon
chr8:4848085-4848288
Coord A exon
NA
Coord C2 exon
chr8:4847336-4847448
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTCTTCTTGAGGCACTGCAGCTC
3' ss Score
-0.97
Exon sequences
Seq C1 exon
GAGCTGGAACATACACGACCTCTTCACTGAGTACAAAGACTGCAAGCACCTCGGACCCTCCCAATATATGTAAAGTGAAACCACAACAATTGCAGACAAGCAGCCTAGCTTCTGCAAGCCACTTTTCCCAGCTGAGCTGCATGCCATCCCTCATTGCCCAACAACAGCAGAGTCCCCAGGTCTATGTGTCTCAGTCTGCAGCAG
Seq A exon
NA
Seq C2 exon
CTCAAATTCCAGCTTTTTATATGGATACAAGTCACCTGTTCAACACCCAACATGCACGTTTGGCACCACCATCTTTGGCCCAGCAGCAAGGCTTTCAACCAGGACTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-49-57,49-56-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTCCCCAGGTCTATGT
R:
CGTGCATGTTGGGTGTTGAAC
Band lengths:
96-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]