GgaALTA0001645-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003354 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr27:4851565-4852090:-
Coord C1 exon
chr27:4851883-4852090
Coord A exon
chr27:4851648-4851759
Coord C2 exon
chr27:4851565-4851647
Length
112 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCTGGGCTGTGCTTGGCAGGCT
3' ss Score
6.03
Exon sequences
Seq C1 exon
ACCTCGCTGGTGCATTTGCTGAAGACGGTGCGCCTGCTGCGGCTGCTGCGGCTGCTGCAGAAGTTGGACCGCTACTCGCAGTACAGTGCCATGGTGCTGACGCTGCTCATGTCTGTGTTCGCACTGCTGGCCCACTGGATGGCGTGCATCTGGTACGTCATCGGCCGCAAGGAGATGGAGAGCAACGACCCGCTGACCTGGGACATCG
Seq A exon
GCTGGCTGCACGAGCTGGGCAAGAGGCTGGAGGCTCCCTACATCAACAACTCAGTGGGGGGGCCCTCCATCCGCAGCGCCTACATCGCCTCCCTCTACTTCACCCTCAGCAG
Seq C2 exon
CCTGACCAGCGTGGGCTTCGGCAACGTCTGCGCCAACACTGATGCCGAGAAGATCTTCTCCATCTGCACCATGCTCATTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-10-15,10-14,10-13,10-12-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(32.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGCATTTGCTGAAGAC
R:
TCTTCTCGGCATCAGTGTTGG
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]