GgaALTA0001720-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003500 | TSC1
Description
NA
Coordinates
chr17:7377890-7379187:-
Coord C1 exon
chr17:7379065-7379187
Coord A exon
chr17:7378075-7378077
Coord C2 exon
chr17:7377890-7378074
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GCTGTGTTCTTTCCTTTGAGGAG
3' ss Score
5.23
Exon sequences
Seq C1 exon
CTTTCCAACAGTGAATCAGTGCAACAGCAGATGGAGTTCTTGAACAGACAACTTCTGGTTCTTGGAGAGGTCAATGAGTTGTACCTGGAGCAGCTGCAGCACAAGCACACAGACACTACAAAG
Seq A exon
GAG
Seq C2 exon
GTTGAAATGTTGCATGCTGCTTTTCGAAAGGAACTGGAGAAAGCAAAATTGTGTGTTCAGCAGCAAAGCCAAAGGCTCGATGCTTCTCAGAAACGGATAGCTGAACTGGAATCTCAGCTTTCTAAAAAGGACCACCTCTTCTTGGAGCAAAAGAAATACCTGGAAGATGTCAAAATCAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-19-28,19-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACAAGCACACAGACACT
R:
CCTTTGGCTTTGCTGCTGAAC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]