GgaALTA0001753-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003578 | FN1
Description
NA
Coordinates
chr7:4367250-4368633:-
Coord C1 exon
chr7:4368544-4368633
Coord A exon
NA
Coord C2 exon
chr7:4367250-4367584
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
AAACGGTATCCAACTTCCAGGCA
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCTTAGAACCAGGGACCGAATACACAATCTACATCATTGCTGTGAAGAACAATCAAAAGAGTGAACCACTGGTTGGCCGAAAAAGGACAG
Seq A exon
NA
Seq C2 exon
GCACTTCAGGGCACCCACAGACAATAGGACACCAAGGTCAGCAAGTCTTCTTCGAGGAGCATGGCTACAGGAGGCCTGTACCCACGACAGCAACTCCCCTTAGGCCTGGGTCGAGACGGCAGCCACCAAATGTAGATGAAGCAATTGAAATCCCAGGGTACCAAGTGCCAATCATAGTTGTACCTTCATACCCCCACTCCCGTGAGCCCAGACGCAACGACACCACGGGCCAAGAAGCTCTTTCTCAGACAACCATCTCCTGGAGGCCTTTGCTGGAGAGCACTGAGTACATCATCTCATGCCAACCAGTCAGCCAGGATGAAGATACTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-40-44,40-43-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.795
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
NA
C2:
PF0004116=fn3=PU(53.8=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGGGACCGAATACACA
R:
GATTGGCACTTGGTACCCTGG
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]