GgaALTA0001842-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003742 | CPAMD8
Description
NA
Coordinates
chr28:3780477-3781038:+
Coord C1 exon
chr28:3780477-3780619
Coord A exon
NA
Coord C2 exon
chr28:3780976-3781038
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TTTATTTCTTGTTCCAGCAGAGC
3' ss Score
7.65
Exon sequences
Seq C1 exon
GAAACCGGCTTGGTGGTGATGACGGATACAGTCAGCTTAAACCACAGGCAGAATGGAGGCATGTACACGGATGAGGCTGTCCCAGCTTTTCAGCCTCACACCGGGACATTGGTGGCCACAATGCGTTCTAAAATGGCACAGAG
Seq A exon
NA
Seq C2 exon
AGCAGAGAAGAGAAAAAGAACCTTCTTTCCAGAAACGTGGATATGGCACTGCCTCAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742-16-19,16-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0020717=A2M=PU(9.8=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCAGCCTCACACCGGG
R:
AGTGCCATATCCACGTTTCTGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]