GgaALTA0001876-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6841908-6842683:+
Coord C1 exon
chr17:6841908-6841999
Coord A exon
chr17:6842563-6842601
Coord C2 exon
chr17:6842602-6842683
Length
39 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AGGTTCTTGTTCCATTGTAGAAT
3' ss Score
8.26
Exon sequences
Seq C1 exon
TCCTCCCAAATGGAAATGAAAGGCTTTCATTTTTCTGATGGTAAACAGAATATGTCCTCTGGAGGGTCTGTACCGTCACCACACGCATACAG
Seq A exon
AATTTACTCCATGAATGTTGTCGACTCTTCGATTTCCAG
Seq C2 exon
GCCTAGCTCTGCCAGCCCAAATGGGAAGCCATCTGGACCAGCAGTTAGTATGGGCTCTGTGCAAGGACACTATGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-39-47,39-46,39-45-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGAGGGTCTGTACC
R:
TGCACATAGTGTCCTTGCACA
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]