GgaALTA0001954-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6349764-6351723:-
Coord C1 exon
chr8:6351591-6351723
Coord A exon
NA
Coord C2 exon
chr8:6349764-6350377
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TCTTCCTTTTATTTCAGCAGGGA
3' ss Score
7.84
Exon sequences
Seq C1 exon
CTTCCCGGTCTTCCAGCCAAACTAAATCAGGTAAGGAGAAGTCCTCGCGCAGTCCTCTTCGAGCGACGACCCTTGAAAGCAATGTGAAAAAAAGCAACCGGGTGGAATTTCGTGAACCACTGGCTTCGTACAG
Seq A exon
NA
Seq C2 exon
GGATACATTGAGTTCTCTGCCTCATCACAGTTCTGGCCAAGTGGAAGCCAAGCAACTTCTGTCTTGTTTGGACTTCTGTGAAGCAGAAGGGAAGACTGAAGTAATGGGCCGTGTGAGACATGACAGAGATGAACGGGATCTCCACAGAAGAGATTTTGAAAGTCCATGTTCTTCTGCTGCAGATAAGACTGTTGTTAGATATTTAAATGACGGACCAGCAATTGATGCCTTGCAAAATAACGAGGCATTTCTTAAAGCCGCAACACCTCCAAGATTGGAAGAGGAAAAAACTAGCAGCTCCAGAGGAGATGAGAGTAGCAGTAAAGCTCCCCTGAGTAACACATCCCAGGACGGTGAACTGAAAGTGTCTTTCCCTTCTGCCATGAGCACTAGTGCTCATAGGCTGGAAATCTTGAAACGGCGGCAGCACGATGCTAAGCTGGAGAAGCTGAAGGAGCGGATTCGTAAGCAGTGGGAGCATTCTGAAGAGCTGGGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-4-7,4-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGGAATTTCGTGAACCA
R:
AGTTGCTTGGCTTCCACTTGG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]