GgaALTA0002002-3/3 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr14:2264331-2265809:-
Coord C1 exon
chr14:2265647-2265809
Coord A exon
chr14:2264458-2264480
Coord C2 exon
chr14:2264331-2264457
Length
23 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
GCCATGCCATCCCTCCGTAGGTG
3' ss Score
10.42
Exon sequences
Seq C1 exon
ATTTCCGAGAAATATGGGCCAGTGTTCACTGTCCACCTGGGGATGCAGCAAGTGGTGGTGCTGAGCGGCTACGAGGCAGTGAAGGATGCACTTCTGAACACAGCGGATGTGTTTGCAGACAGACCCCCTATCCCCATCTTCCATCAGATCCAGCATGGAAATG
Seq A exon
GTGTGTTCTTCTCTTCCCAAGAG
Seq C2 exon
CTCTGGAAGACAACACGGAGGTTCACCTTGGCGGTTATGCGGGATCTGGGCATGGGGAAGCGGCTTGCGGAGGAAAGGATGCTCGAGGAGCTTCAGTTTCTCATTGAGCTGATCAAATCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-5-3,5-2,5-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(32.5=100)
A:
NA
C2:
PF0006717=p450=FE(30.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGCAGTGAAGGATGC
R:
ACCTCCGTGTTGTCTTCCAGA
Band lengths:
117-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]