GgaALTA0002064-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004180 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr17:5694588-5696288:+
Coord C1 exon
chr17:5694588-5694853
Coord A exon
chr17:5696113-5696124
Coord C2 exon
chr17:5696125-5696288
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CATTTCTCACCTTGTTTCAGGAG
3' ss Score
8.98
Exon sequences
Seq C1 exon
CGCTGCGGGAGCAGCTGGACGGCAGGCTGTTCGGGCAGCACCTGGCCAAGGAGGTGGTGCTGCGGGCGGTGACGGGCTTCAGCAACAACCCCAGCCCCAAGAAGCCGCTGACGCTGTCGCTGCACGGCTGGGCCGGCACCGGGAAGAACTTCCTGAGCCAGCTGCTGGCGCGGCACGTGCACCCCGCCGGGCTGCGCAGTAAATTCGTGCACCTCTTCCTGGCCACGCTGCACTTCCCGCACCCGCAGCGCGTGCCGCTGTACCAG
Seq A exon
GAGCAACTGCAG
Seq C2 exon
AACTGGATTCGGGGCAATGTCAGCGCCTGTGCACACTCAGTCTTCATTTTCGATGAGATGGACAAAATGCATCAGGGCCTCATTGATGCCATCAAGCCCTTCTTGGACTACTATGAGCAGGTTGACGGGGTGTCCTACAGGAAAGCCATCTTCATCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004180-1-5,1-4,1-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.3=100)
A:
NA
C2:
PF063096=Torsin=PD(15.7=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCAGTAAATTCGTGCAC
R:
GACATTGCCCCGAATCCAGTT
Band lengths:
96-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]