GgaALTA0002093-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5568781-5569554:-
Coord C1 exon
chr15:5569410-5569554
Coord A exon
NA
Coord C2 exon
chr15:5568781-5568871
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
AACGTTAATTAATTTTCCAGAAG
3' ss Score
5.59
Exon sequences
Seq C1 exon
CGGCCCATTGGCAGGAGGAGGTACGATGAGCACGAGGACCTCTCGGACGTGGAGGAAATCGTCAGCGTCAGGAGTTTCAATCTGGAGGAGAAATTAAAGAGCAAAACGTACCGCGGGGATTTCGTGCACTCTATGGACGGGAAAG
Seq A exon
NA
Seq C2 exon
AAGCACGTCCTACGCTCACCTTCCCAGTGCTCCTGTGGTTGCCATCGCTCTGTGCTGACCTTCACCCAGCTGCACAGCCCTACATCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225-7-2,7-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PU(12.0=75.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCGTCAGCGTCAGGAG
R:
CTGGGAAGGTGAGCGTAGGA
Band lengths:
119-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]