GgaALTA0002159-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7987537-7988764:-
Coord C1 exon
chr18:7988560-7988764
Coord A exon
chr18:7987696-7987698
Coord C2 exon
chr18:7987537-7987695
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTC
5' ss Score
4.58
3' ss Seq
TCATCATTTCCTCCATCTAGCAG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAGGTCCTTTTCCCTCTCTTCTTCTTGTTCTGGCTGATCCTGATGAGCATGATGCACCCACACCGGTGGTACGATGAGGTCCCCAACTCCAACCTGGGCGTGCTGGACCCCTCTGTGCTGGTGAACTTGGTGGTTGGGTACACGCCGCCCACCAGGATGGCCAGGGAGATCATGAGGAAGGTGGCTTACGATAACTTCGAAGACG
Seq A exon
CAG
Seq C2 exon
GCCTCATCACAGAGGAGTATTTAAGTGAAGAGGACCTGGAAAAGGCCAGTGCTTCCAAATCCTCCAACTTCGTGGGCGTTGTGTTCAAGGATGCCATGTCCTACCAGCTGAGGTTTCCTGACATGGTGGCTATGGCTTCTGTCTATACAGAGTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGGGAGATCATGAGGAA
R:
TTGGAAGCACTGGCCTTTTCC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]