GgaALTA0002293-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004526 | TNR
Description
NA
Coordinates
chr8:7360676-7361212:+
Coord C1 exon
chr8:7360676-7360795
Coord A exon
NA
Coord C2 exon
chr8:7361075-7361212
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CTTTCGGCTTACAGTTGCAGGAG
3' ss Score
1.4
Exon sequences
Seq C1 exon
CCATGGATGCCCCGCTGGGTGTCACTGCCACCAACATCACCCCCACTGAGGCACTGCTGCAGTGGAACCCCCCGCTGATGGATGTGGAGAGCTACGTCCTCGTCCTCACCCGCCACACAG
Seq A exon
NA
Seq C2 exon
GAGAAACAATTCTGGTGGATGGAATCAACCAGGAGTACCAGCTGACCAACCTTCAGCCCAGCACCACCTACACGGTCGCCATGTATGCCACCAACGGGCCCCTCACCAGCCAGACTATCAGCACCAACTTCACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-13-14,13-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(49.4=92.7)
A:
NA
C2:
PF0004116=fn3=PD(49.4=80.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGAGAGCTACGTCCTCG
R:
TGAAGGTTGGTCAGCTGGTAC
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]