GgaALTA0002350-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10057321-10059691:+
Coord C1 exon
chr10:10057321-10057434
Coord A exon
chr10:10059545-10059547
Coord C2 exon
chr10:10059548-10059691
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TCCTTCTGTTCTTCCTAAAGCAG
3' ss Score
6.71
Exon sequences
Seq C1 exon
AGCATCCCCAAGCCTGGACACAAAAGAACGGATTCAACTCACAGTAGCAATGAATCTGAATATACTTTTAGCTCTGAGATCACAGAAGCAGAAGACTTACCACTGAGGATGGAG
Seq A exon
CAG
Seq C2 exon
GAGCCAAGTGAGAAAAAGGCACCATTGGACATGTCTCTGTTCCTCAAGCTGCAGAAACGGGTTACAGAGCTGGAGCAAGAAAAGCAATCCCTGCAGGATGAACTGGACAGAAAGGAAGAACAGGCTCTTCGTGCCAAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-34-40,34-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.701
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGAGATCACAGAAGCAGA
R:
CCGTTTCTGCAGCTTGAGGAA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]