GgaALTA0002350-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8309590-8311893:+
Coord C1 exon
chr10:8309590-8309637
Coord A exon
chr10:8311750-8311797
Coord C2 exon
chr10:8311798-8311893
Length
48 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTCTGTTCTTCCTAAAGCAGGAG
3' ss Score
5.3
Exon sequences
Seq C1 exon
TTTAGCTCTGAGATCACAGAAGCAGAAGACTTACCACTGAGGATGGAG
Seq A exon
GAGCCAAGTGAGAAAAAGGCACCATTGGACATGTCTCTGTTCCTCAAG
Seq C2 exon
CTGCAGAAACGGGTTACAGAGCTGGAGCAAGAAAAGCAATCCCTGCAGGATGAACTGGACAGAAAGGAAGAACAGGCTCTTCGTGCCAAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-48-51,48-50,48-49-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTCTGAGATCACAGAAGCAGA
R:
GCACGAAGAGCCTGTTCTTCC
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]