GgaALTA0002359-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr10:10103552-10104883:+
Coord C1 exon
chr10:10103552-10103638
Coord A exon
chr10:10103726-10103749
Coord C2 exon
chr10:10103750-10104883
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GCTAACTTTCCATTTTTCAGATG
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTGACTCAAAAAGGGTGGCTCAGCAACTGCGTGCATGTGGTGTTTTGGAAACCATTCGGATCAGTGCGCAGAGCTATCCGTCCAG
Seq A exon
ATGGACTTACATTGAGTTTTTCAG
Seq C2 exon
CCGCTACAGCATCCTTATGACGCAGCAGGAGCTCTCTGTCAATGATAAGAAGCAGATCTGCAAGATTGTTTTGCAGCGGCTAATCCAGGTTGGTGCACATGCACCGATCCCATTATGCATCACATACCATCTGGTTATTGATAAAAGGGGCCCTTTTTCTCAGAGCAGGAATCCTAACTCCCCTTAAGTAGGAAAAGGATAAACGTATTTCCCNNNNNNNNNNGCAGCTGATGACCATATTAGATTCAGCTTGAAGGAGAGGCAGTATCTGTAAGCCTTTCAGATTAAAGGCGTAGAGGAGAAACCACTTCTTCCCTTTGGAATATTATTTGTAGTGTTAAAAACCATGCTGTTTAGCTACGTATGTGTGATGCTTTGCAGTATGTCACTATCATTTAACACTTTACGAGACGGGGAACCTTGGGTACCAAATAAGTGCCATCCTCAGGAATTTGAAGAGTGTAATAAGTGGCTGTTACTGAGGATTGGAAGCTGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-19-18,19-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGGATCAGTGCGCAGAG
R:
CCGCTGCAAAACAATCTTGCA
Band lengths:
112-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]