GgaALTA0002538-1/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004992 | TTC16
Description
NA
Coordinates
chr17:5558951-5559824:-
Coord C1 exon
chr17:5559583-5559824
Coord A exon
NA
Coord C2 exon
chr17:5558951-5559092
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
ATAGTCCTGCTTCTCTGCAGACT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
Seq A exon
NA
Seq C2 exon
ACTGCTTCTTTTGCCTGGGGGAGCTGACCTATGCGCTGGCGGATTACCAGCAGGCGCTGGAGCTGAGTCCAGGGAACCGCGCTGTGCAGGAACGTGTTGCAGCTGTGTTGCATGAGAAGGGCTGTCAGGACTTGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992-2-5,2-4,2-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134291=TPR_15=PD(0.1=0.0),PF134241=TPR_12=PD(86.6=86.6)
A:
NA
C2:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(23.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]