GgaALTA0002670-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1954460-1955022:+
Coord C1 exon
chr2:1954460-1954682
Coord A exon
chr2:1954953-1954955
Coord C2 exon
chr2:1954956-1955022
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACT
5' ss Score
3.33
3' ss Seq
CCTTACTTTTTTCCTCTTAGCAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
Seq A exon
CAG
Seq C2 exon
CCTTTCTGACAAGAGCGATGTAACAGAAAAAGCAGTGGATGTCAGCACAAAGAGGGATAAGCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-14-19,14-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGAGAAGCAAGCGAGC
R:
CCCTCTTTGTGCTGACATCCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]