GgaALTA0002924-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8431509-8470544:+
Coord C1 exon
chr5:8431509-8431563
Coord A exon
NA
Coord C2 exon
chr5:8470459-8470544
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTGCTTTTGTCTTTCAGCAGGCC
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATGGCCAGGCTGGCCGACTACTTCATCGTGGTGGGCTATGACCACGAGAAGACAG
Seq A exon
NA
Seq C2 exon
GCCCAGCAGAAGGTTTGGGAAAAATAATCCAGAGGTTTCCTCAGAAGGACTGGGAAGACACTCCTTTCCCACAGGGAATAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-0-5,0-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=76.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTATGACCACGAGAAGA
R:
TGGGAAAGGAGTGTCTTCCCA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]