GgaALTA0002986-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005824 | SUSD2
Description
NA
Coordinates
chr15:8079781-8080972:-
Coord C1 exon
chr15:8080771-8080972
Coord A exon
NA
Coord C2 exon
chr15:8079781-8079866
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGAGCACTGATCTTTTTCAGACA
3' ss Score
6.11
Exon sequences
Seq C1 exon
CAACACTCCATCCATCTGGAGCCCAGCACATGCGTTGGCTTGGCACCTTAGCGAAGACTTCAGAAATAAACCAGCTGCATGGGCAACTGCAAAATGTATAGAATGGGACAGGGAGGAAGAGAAGCTTCCAAACTTCATGGAAGAAATTATAGATTGCCCTTGCACCTTGGCACAGGCAAGAGCTGACACTGGCAGGTTCCAT
Seq A exon
NA
Seq C2 exon
ACAGATTACGGCTGTGACATTGAAAAGGGAAGTGTGTGTACTTACCACCCTGGCGCTGTGCACTGTGTAAGGGCCATTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
NA
C2:
PF0378212=AMOP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCCAGCACATGC
R:
GGCTTGAATGGCCCTTACACA
Band lengths:
271-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]