GgaALTA0003051-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005944 | ZNF639
Description
zinc finger protein 639 [Source:RefSeq peptide;Acc:NP_001264409]
Coordinates
chr9:17010547-17011621:-
Coord C1 exon
chr9:17011558-17011621
Coord A exon
chr9:17010647-17010679
Coord C2 exon
chr9:17010547-17010646
Length
33 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTGTTTTGTGTTTATTTTAGGAT
3' ss Score
12.43
Exon sequences
Seq C1 exon
CTTCCCCCGCGGGGAGCACCGCGTCCGGAGGCGGCTGCGGTGCGGGCTGGGCGCGGAGCGGAAG
Seq A exon
GATTAAGGTGTATTAAACGCTGTCCCTCCACAG
Seq C2 exon
ATGAAGGCCTCGCGCTGCTGCATTTGCTGCATGTGGGAGCAGTGCAGCTGTCAGCCTCTGAGCTGCTCTGCTTGCTGATGCTGAAGAGTGTGGGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005944-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]