GgaALTA0003131-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3501843-3509903:-
Coord C1 exon
chr4:3509667-3509903
Coord A exon
chr4:3501889-3501993
Coord C2 exon
chr4:3501843-3501888
Length
105 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AATGACTCCCTTATCCACAGGCC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTTTGTCGAGAGTTTCAGCGTGGAAATTGCACACGTGGTGAGAACGACTGCCGCTATGCTCACCCGATAGATATTGCGATGATAGACACCAATGAAAATACTGTTACAGTTTGCATGGATTACATCAAAGGTCGATGCTCTAGGGAGAAATGCAAGTACTTTCATCCCCCTGCACACCTGCAAGCCAAAATCAAGGCAGCTCAACATCAGGTGAACCAGACAGCTGCAGCTGCAATG
Seq A exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAG
Seq C2 exon
GCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-9-10,9-9,9-8-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.278 A=NA C2=0.657
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACGACTGCCGCTATG
R:
GGGGATGAACGTAGGCTGTTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]