GgaALTA0003181-3/3 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr20:9718354-9722956:+
Coord C1 exon
chr20:9718354-9718429
Coord A exon
chr20:9719339-9719732
Coord C2 exon
chr20:9719733-9722956
Length
394 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TACTGTTTTTTATTGTACAGCCA
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTTTCTGCGATAAGACAGGAGCTGAGGAAGAAGCAGCTACCAGAGGTGGTGGTAGAAAACTATGAAAACTTGCCAG
Seq A exon
CCAGGACTGCGCGTGGTGAGAATAACTGACCCCTGGGGTGTGTTCCTGATCTTCACACCCTTTCTTTACCATCTCTTAGCTTGGAAATCACAGGGTGCCTCCTGCTGTTTGCTACTTGCTGTGCTGGCAGCACTGTCCTTGAGGGTAGAGGGACACTCGTGAAAGGGGCACTGCACTGACCTTGCCACTGCTTCAGTGCCCAGCCTTTCCCCTGCCTTCACAGTGCATGGGTGGTGGTGACTTAGCATCATAGACTGGCTTGAGCTGGAAGGAACCTCAAAGATCACCTCGTTCCAACCCCTCACTTGGTGGCATCCATCCCAGATCATGGACGTTGCAATCCCAGAGAGCTTTCCTATGCTGAGTGATTTCTCCCTTGTCTCCTTCGGTGCAG
Seq C2 exon
GCCGTGAGTTCCGGGTCATCATCATCAGCACAGTCCACACCAGTGAGAGCCTGCGCGTCTCGGCCTCCCACAACCATGAGTTCTTCAACGAGGCCAGAGTGCTCAACACCATCATGACGAGGGCTCAGTCACAGGTCATTGTGGTGGGGGATGCGGTGGCCTTGTGCTCCCATGGTCAGTGCAGCAAGGTGTGGAAGCGCTTCATCCAGGAGTGCATTGAGAAGGGGAGCATCTCCCCAGCAAACCTGACCATGGCCCAGATCAAACAGGCAGCATGCGACAAGGAGAGCTGGTGCAGGAGGAGCCCAGAGGGCAATGATGAGGACAGTGACACGGATTCCTGGAGCTCTGAGACTGAAAGCATGAATCCCGATGATCCCATCCTCCAGGAGCTCTTAGATGAGAGCAAGAACGTGCTGGTAACAGTGTCTGAAGAAGGGCTGCTCAATGTGAAGTCTGACACTTCAAACCAATGGGAAGACAGGCAGGAATACGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138-6-8,6-7,6-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(12.3=100)
A:
NA
C2:
PF130871=AAA_12=PD(25.5=4.8),PF0077314=RNB=WD(100=33.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATAAGACAGGAGCTGAGG
R:
ATGCTGCCTGTTTGATCTGGG
Band lengths:
346-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]