GgaALTA0003353-2/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006457 | RBMX
Description
heterogeneous nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001073196]
Coordinates
chr4:4391165-4391472:-
Coord C1 exon
chr4:4391347-4391472
Coord A exon
chr4:4391254-4391268
Coord C2 exon
chr4:4391165-4391253
Length
15 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCT
5' ss Score
4.28
3' ss Seq
TTTGTACTAAGTCTCAGTAGTCT
3' ss Score
-3.6
Exon sequences
Seq C1 exon
TTACTCGAGCAGAGATTACCCCAGTTCCAGGGACACACGGGACTATGCACCACCTCCGCGTGACTATGCGTATCGTGATTATGGTCATTCCAGTTCACGTGATGAATACCCCTCCAGGGGCTATAG
Seq A exon
TCTTTCCTCTTACAG
Seq C2 exon
CGATCGTGATGGATACGGTGGTGGACGTGACAGAGACTACTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457-22-22,22-21,22-20,22-19-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGACTATGCGTATCGTGA
R:
AGTCTCTGTCACGTCCACCAC
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]