GgaALTA0003616-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000006937 | P4HTM
Description
NA
Coordinates
chr12:11929870-11931312:-
Coord C1 exon
chr12:11931150-11931312
Coord A exon
chr12:11929995-11929997
Coord C2 exon
chr12:11929870-11929994
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGTCTCTCGTTCACTCTCAGCAG
3' ss Score
4.09
Exon sequences
Seq C1 exon
GCGTGCTGAGTTTGGAGGAGTTCAAGAGACTGAACATCCGTGACTTCCACAAGTACATGGGGAGCCAGAAAGTGAAGATGAGTGACGCGGTGCGCAACAGCCAGCACACGTGGCTGTACCAGGGCGAGGGCGCACACCAGGTCATGAGAGCCATACGGCAGAG
Seq A exon
CAG
Seq C2 exon
GGGCCCTGTGCTTTGCTAACTGTCCCCGAGGTCTGTAGCTGGTGTGCAGGAGTCCAGAGAAGCGCTGAGATGGCACATGAAGGCTCCAGGGACACCCACAGGAGGGATCTTTCTGAGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006937-8-9,8-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(10.5=20.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGGTCATGAGAGCCAT
R:
ATCTCAGCGCTTCTCTGGACT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]